Abstract
Colombia is the second country with the largest number of amerindian ethnic groups on the continent thanks to its geographical location and that it is located in the Northwest of the South American continent, it had to have been a corridor for theAmerindian migrations. But due to the Amerindian, European and African mix, which occurred in different proportions throughout the country, there were changes in population dynamics. Objective: an indigenous sample from two ethnic groups - Pijao and Nasa Paez, was molecularly characterized - and another sample of unrelated mestizo individuals from Tolima; to identify heterozygosity, allelic frequencies and Fst distances, by analyzing 100 informative markers of ancestry (autosomal SNPs). Methodology: To carry out this study, DNA was obtained from blood samples taken in indigenous and mestizo people from the aforementioned regions, to typify 100 autosomal SNPs or ancestry informative markers (AIMs). Results: Heterozygous (Het) analyzes showed that low values were presented in the Nasa (0,181) and Pijaos (0,250) indigenous ethnic groups, while those of Planadas (0,402) and Ibagué (0,415) presented high values. Analyzes performed globally showed that Tolima
populations are less heterozygous than ancestral populations. Conclusions: The Nasa native population is the one with the greatest conservation of the ancestral native variation reflected with the heterozygous analyzes and has a greater genetic distance concerning the mestizo populations.
References
Winkler CA, Nelson GW, SmithMW. (2010) AdmixtureMapping Comes ofAge. Annu Rev Genomics Hum Genet. 11:65–89.
---------------------------------------------------------------------------------------------------
Sandoval K,Moreno-Estrada A,Mendizabal I, Underhill PA, Lopez-ValenzuelaM, Peñaloza-Espinosa R, et al. (2012) Y-chromosome diversity in Native Mexicans reveals continental transition of genetic structure in the Americas. Am J Phys Anthropol. 148:395–405.
---------------------------------------------------------------------------------------------------
Reich D, Patterson N, Campbell D, Tandon A, Mazieres S, Ray N, et al. (2012) Reconstructing Native American population history. Nature. p. 370–4.
Martínez-Cortés G, Salazar-Flores J, Gabriela Fernández-Rodríguez L, Rubi-Castellanos R, Rodríguez-Loya C, Velarde-Félix JS, et al. (2012) Admixture and population structure in Mexican-Mestizos based on paternal lineages. J Hum Genet. 57:568–74.
---------------------------------------------------------------------------------------------------
Salas A, Richards M, Lareu MV, Scozzari R, Coppa A, Torroni A, et al. (2004) The African Diaspora: Mitochondrial DNA and the Atlantic Slave Trade. Am J Hum Genet. 74:454–65.
---------------------------------------------------------------------------------------------------
Melton PE, Briceño I, Gómez A, Devon EJ, Bernal JE, Crawford MH. (2007) Biological relationship between Central and South American Chibchan speaking populations: Evidence from mtDNA. Am J Phys Anthropol. 133:753–70.
---------------------------------------------------------------------------------------------------
Beleza S, Alves C, Reis F,Amorim A, Carracedo A, Gusmão L. (2004) 17 STR data (AmpF/STR Identifiler and Powerplex 16 System) from Cabinda (Angola). Forensic Sci Int. 141(2–3):193–6.
---------------------------------------------------------------------------------------------------
DANE. Colombia una nación multicultural: su diversidad étnica. Dirección de Censos y Demografía. 2006.
---------------------------------------------------------------------------------------------------
Rojas W, Parra MV, Campo O, Caro MA, Lopera JG, Arias W, et al. (2010) Genetic make up and structure of Colombian populations by means of uniparental and biparental DNA markers. Am J Phys Anthropol. 143(1):13–20.
---------------------------------------------------------------------------------------------------
Bryc K, Auton A, Nelson MR, Oksenberg JR, Hauser SL,Williams S, et al. (2010) Genome-wide patterns of population structure and admixture in West Africans and African Americans. Proc Natl Acad Sci U S A. 107(2):786–91.
---------------------------------------------------------------------------------------------------
Perego UA, Angerhofer N, Pala M, Olivieri A, Lancioni H, Kashani BH, et al. (2010) The initial peopling of the Americas: A growing number of founding mitochondrial genomes from Beringia. Genome Res. 20(9):1174–9.
---------------------------------------------------------------------------------------------------
O’Rourke DH, Raff JA. (2010) The Human Genetic History of the Americas: The Final Frontier. Current Biology. p. 202–7.
---------------------------------------------------------------------------------------------------
Schurr TG, Sherry ST. (2004) Mitochondrial DNA and Y chromosome diversity and the peopling of the Americas: Evolutionary and demographic evidence. Am J Hum Biol. 16(4):420–39.
---------------------------------------------------------------------------------------------------
Corach D, Lao O, Bobillo C, van Der Gaag K, Zuniga S, Vermeulen M, et al. (2010) Inferring continental ancestry of argentineans from autosomal, Y-chromosomal and mitochondrial DNA. Ann Hum Genet. 74(1):65–76.
---------------------------------------------------------------------------------------------------
Rondón F, Osorio JC, Peña ÁV, Garcés HA, Barreto G. (2008) Diversidad genética en poblaciones humanas de dos regiones Colombianas. Colomb Med. 39(2):52–60.
---------------------------------------------------------------------------------------------------
Rondón, F., Vallejo, G., Osorio, E., & Barreto G. (1999) Frecuencias haplotípicas mitocondriales en la comunidad Indígena Coyaima del departamento del Tolima, Colombia. Rev Asoc Colomb Cienc Biol. 11:45–53.
---------------------------------------------------------------------------------------------------
Galanter JM, Fernandez-Lopez JC, Gignoux CR, Barnholtz-Sloan J, Fernandez-Rozadilla C, Via M, et al. (2012) Development of a panel of genome-wide ancestry informative markers to study admixture throughout the americas. PLoS Genet. 8(3):1002554.
---------------------------------------------------------------------------------------------------
Serre D, Pääbo S. (2004) Evidence for gradients of human genetic diversity within and among continents. Genome Res. 14(9):1679–85.
Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF. (2008) New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res. 18(5):830–8.
---------------------------------------------------------------------------------------------------
Wills C. (2007) Principles of Population Genetics, 4th edition. J Hered. 257–311.
---------------------------------------------------------------------------------------------------
Shastry BS. (2006) Role of SNPs and haplotypes in human disease and drug development. In: BioMEMS and Biomedical Nanotechnology. Springer; p. 447–58.
---------------------------------------------------------------------------------------------------
Hunley KL, Spence JE, Merriwether DA. (2008) The impact of group fissions on genetic structure in Native South America and implications for human evolution. Am J Phys Anthropol. 135(2):195–205.
---------------------------------------------------------------------------------------------------
Hunley K, Long JC. (2005) Gene flow across linguistic boundaries in Native North American populations. Proc Natl Acad Sci U S A. 102(5):1312–7.
---------------------------------------------------------------------------------------------------
Mulligan CJ, Hunley K, Cole S, Long JC. (2004) Population genetics, history, and health patterns in native americans. Annu Rev Genomics Hum Genet. 5:295–315.
---------------------------------------------------------------------------------------------------
Criollo-Rayo AA, Bohórquez M, Prieto R, Howarth K, Culma C, Carracedo A, et al. (2018) Native American gene continuity to the modern admixed population from the Colombian Andes: Implication for biomedical, population and forensic studies. Forensic Sci Int Genet. 36:e1–7.
---------------------------------------------------------------------------------------------------
Catelli ML, Álvarez-Iglesias V, Gómez-Carballa A, Mosquera-Miguel A, Romanini C, Borosky A, et al. (2011) The impact of modern migrations on present-day multi-ethnic Argentina as recorded on the mitochondrial DNA genome. BMC Genet. 12:77.
---------------------------------------------------------------------------------------------------
Silva-Zolezzi I, Hidalgo-Miranda A, Estrada-Gil J, Fernandez-Lopez JC, Uribe-Figueroa L, Contreras A, et al. (2009) Analysis of genomic diversity in Mexican Mestizo populations to develop genomic medicine in Mexico. Proc Natl Acad Sci U S A. 106(21):8611–6.
---------------------------------------------------------------------------------------------------
Li JZ, Absher DM, Tang H, SouthwickAM, CastoAM, Ramachandran S, et al. (2008)Worldwide human relationships inferred from genome-wide patterns of variation. Science (80- ). 319(5866):1100–4.
---------------------------------------------------------------------------------------------------
Kidd JR, Friedlaender F, Pakstis AJ, Furtado M, Fang R, Wang X, et al. (2011) Single nucleotide polymorphisms and haplotypes in Native American populations. Am J Phys Anthropol. 146(4):495–502.